{"server":"com.claidex/failure-intelligence","count":24,"tools":[{"name":"claidex_capabilities","title":"Claidex MCP Capabilities","description":"Return the Claidex MCP feature map, configured storage/model providers, safety controls, resources, prompts, and tool counts.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","properties":{},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"claidex_claim_risk_matrix","title":"Claidex Claim Risk Matrix","description":"Search claims and summarize MRS bands, trial phases, failure archetypes, and high-risk programs for rapid diligence.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["query","limit"],"properties":{"limit":{"type":"integer","default":10,"maximum":20,"minimum":1},"query":{"type":"string","minLength":1,"description":"Drug, target, disease, sponsor, or failure archetype."}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"claidex_health_snapshot","title":"Claidex Health Snapshot","description":"Return Sentinel metrics, coverage, graph counts, recent automation runs, MRS bands, and preprint-watch summaries.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","properties":{},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"claidex_research_prompt","title":"Claidex Research Prompt","description":"Compose a rigorous, reusable investigation prompt that tells an MCP client which Claidex tools and resources to use.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["objective","risk_tolerance"],"properties":{"disease":{"type":"string","description":"Optional disease area."},"objective":{"type":"string","minLength":1,"description":"The investigation objective to turn into a reusable MCP prompt."},"target_gene":{"type":"string","description":"Optional HGNC target symbol."},"risk_tolerance":{"enum":["low","medium","high"],"type":"string","default":"medium"}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"claidex_tool_catalog","title":"Claidex Tool Catalog","description":"Return the complete MCP tool catalog, optionally including full input schemas and filtering native versus agent-backed tools.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["include_schemas","source"],"properties":{"source":{"enum":["all","claidex-agent","mcp-native"],"type":"string","default":"all"},"include_schemas":{"type":"boolean","default":false,"description":"Include full JSON Schemas in the catalog."}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"consult_specialist_model","title":"Consult Specialist Model","description":"Ask a specialist Gateway model for code, database/tool-calling, statistics, literature, preprint, or mechanistic synthesis support. Use for hard subproblems, second opinions, code generation/review, or complex synthesis.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["task_type","prompt"],"properties":{"prompt":{"type":"string","maxLength":6000,"minLength":1,"description":"Focused task for the specialist model."},"context":{"type":"string","maxLength":10000,"description":"Relevant context, snippets, or data. Do not include secrets."},"task_type":{"enum":["code","database","reasoning","statistics","research","literature","synthesis","preprint","general"],"type":"string","description":"Specialist routing target."}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"fetch","title":"Fetch Claidex Result","description":"Fetch a specific result returned by search. This compatibility tool supports OpenAI and ChatGPT remote MCP retrieval flows.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["id"],"properties":{"id":{"type":"string","minLength":1,"description":"Result id returned by the search tool."}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"fetch_research_url","title":"Fetch Research Url","description":"Fetch a public HTTPS research URL, JSON API response, package metadata endpoint, documentation page, or dataset preview. Blocks private/internal hosts and truncates large responses.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["url","max_chars"],"properties":{"url":{"type":"string","format":"uri","description":"Public HTTPS URL to fetch."},"max_chars":{"type":"number","default":8000,"maximum":20000,"minimum":500}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"get_claim_content","title":"Get Claim Content","description":"Retrieve the complete text content of a specific Claidex Claim by its slug. Use this when you need to read the full post-mortem analysis, including hypothesis, failure mechanism, and prevention analysis.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["slug"],"properties":{"slug":{"type":"string","minLength":1,"description":"The Claidex claim slug, e.g. exicorilant-mcrpc-gr-bypass-fourth-failure"}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"query_chembl","title":"Query Chembl","description":"Look up a drug or compound in ChEMBL. Returns mechanism of action, primary target, ChEMBL ID, max development phase, molecular type, and synonyms.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["drug_name"],"properties":{"drug_name":{"type":"string","minLength":1,"description":"Drug or compound name"}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"query_clinicaltrials","title":"Query Clinicaltrials","description":"Search ClinicalTrials.gov for clinical trials. Can search by drug name, condition, target, or NCT ID. Returns trial status, phase, sponsor, primary endpoints, and why_stopped if terminated.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["query","status","phase","max_results"],"properties":{"phase":{"enum":["PHASE1","PHASE2","PHASE3","PHASE4","any"],"type":"string","default":"any"},"query":{"type":"string","minLength":1,"description":"Search term: drug name, condition, NCT ID, or target"},"status":{"enum":["RECRUITING","ACTIVE_NOT_RECRUITING","TERMINATED","WITHDRAWN","COMPLETED","any"],"type":"string","default":"any"},"max_results":{"type":"number","default":5,"maximum":10,"minimum":1}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"query_failure_graph","title":"Query Failure Graph","description":"Query the Claidex failure graph for a specific gene target. Returns the Mechanism Risk Score (MRS), failure counts by phase and archetype, and all related claim slugs.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["target_gene"],"properties":{"target_gene":{"type":"string","minLength":1,"description":"HGNC gene symbol, e.g. PIK3CA, KRAS, EGFR"}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"query_openfda","title":"Query Openfda","description":"Query the FDA FAERS database for adverse event signals for a drug. Returns top adverse event terms, serious case count, and death count.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["drug_name","max_results"],"properties":{"drug_name":{"type":"string","minLength":1,"description":"Drug name as it appears in FAERS"},"max_results":{"type":"number","default":10,"maximum":20,"minimum":1}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"query_opentargets","title":"Query Opentargets","description":"Query Open Targets for target-disease association evidence. Returns genetic evidence score, clinical evidence, known drugs, tractability, and safety liabilities for a gene-disease pair.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["target_gene","disease_term"],"properties":{"target_gene":{"type":"string","minLength":1,"description":"HGNC gene symbol"},"disease_term":{"type":"string","minLength":1,"description":"Disease name or EFO term"}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"query_package_registry","title":"Query Package Registry","description":"Look up package metadata from npm or PyPI before recommending code, analysis packages, API clients, or dataset tooling.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["ecosystem","package_name"],"properties":{"ecosystem":{"enum":["npm","pypi"],"type":"string","description":"Package registry to query."},"package_name":{"type":"string","maxLength":120,"minLength":1,"description":"Package name."}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"rank_documents_by_embedding","title":"Rank Documents By Embedding","description":"Embed a query and candidate documents, then rank documents by cosine similarity. Use for semantic matching, retrieval checks, clustering triage, and lightweight RAG over user-provided passages.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["query","documents","top_k"],"properties":{"query":{"type":"string","maxLength":4000,"minLength":1},"top_k":{"type":"number","default":10,"maximum":20,"minimum":1},"documents":{"type":"array","items":{"type":"string","maxLength":8000,"minLength":1},"maxItems":30,"minItems":1}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"rerank_documents","title":"Rerank Documents","description":"Rerank candidate documents/passages against a query using a dedicated reranking model. Use after retrieval/search when exact relevance ordering matters.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["query","documents","top_n"],"properties":{"query":{"type":"string","maxLength":4000,"minLength":1},"top_n":{"type":"number","default":10,"maximum":20,"minimum":1},"documents":{"type":"array","items":{"type":"string","maxLength":8000,"minLength":1},"maxItems":50,"minItems":1}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"run_computation","title":"Run Computation","description":"Evaluate deterministic mathematical expressions with optional variables. Use for algebra, matrices, vectors, transformations, descriptive numerical checks, and reproducible calculations. Does not execute arbitrary JavaScript or install packages.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["expression","variables"],"properties":{"variables":{"type":"object","default":{},"description":"Variables available to the expression. Values must be numbers, strings, vectors, or matrices.","propertyNames":{"type":"string"},"additionalProperties":{"anyOf":[{"type":"number"},{"type":"string"},{"type":"array","items":{"type":"number"}},{"type":"array","items":{"type":"array","items":{"type":"number"}}}]}},"expression":{"type":"string","maxLength":4000,"minLength":1,"description":"MathJS expression, e.g. mean(values), std(values), multiply(A, b), inv(A)."}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"run_statistical_analysis","title":"Run Statistical Analysis","description":"Run a statistical analysis computation. Supports: Wilson confidence intervals, binomial proportions, phase transition success rates, power calculations, Bayesian posterior estimates, descriptive statistics, and two-proportion comparisons. Returns computed values, interpretation, and LaTeX formula.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["analysis_type","inputs"],"properties":{"inputs":{"type":"object","description":"Named input parameters. wilson_ci: {successes, n, confidence}. phase_transition_rate: {phase, indication, n_succeeded, n_total}. power_calculation: {n, effect_size, alpha}. bayesian_posterior: {prior_success_rate, n_observed, n_success, prior_strength?}. descriptive_stats: {values: number[]}. failure_rate_comparison: {a_success, a_n, b_success, b_n}.","propertyNames":{"type":"string"},"additionalProperties":{"anyOf":[{"type":"number"},{"type":"string"},{"type":"array","items":{"type":"number"}}]}},"context":{"type":"string","description":"Optional context about what this analysis is for"},"analysis_type":{"enum":["wilson_ci","phase_transition_rate","power_calculation","bayesian_posterior","descriptive_stats","failure_rate_comparison"],"type":"string"}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"search","title":"Search Claidex","description":"Search Claidex failure claims and preprint flags. This compatibility tool returns citation-ready results for OpenAI and ChatGPT remote MCP flows.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["query","limit"],"properties":{"limit":{"type":"integer","default":8,"maximum":10,"minimum":1},"query":{"type":"string","minLength":1,"description":"Biomedical failure intelligence query."}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"search_claims","title":"Search Claims","description":"Search the Claidex failure database for post-mortems matching a drug name, gene target, disease, failure archetype, or sponsor. Returns matching claims with title, slug, drug, target, disease, phase, failure archetype, Open Targets score, and MRS score.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["query","category","failure_archetype","limit"],"properties":{"limit":{"type":"number","default":10,"maximum":20,"minimum":1},"query":{"type":"string","minLength":1,"description":"Search term: drug name, gene symbol, disease, or failure archetype"},"category":{"enum":["Oncology","Cardiology","Neurology","Immunology","Infectious Disease","Metabolic","Rare Disease","Other","any"],"type":"string","default":"any"},"failure_archetype":{"enum":["efficacy_failure","safety_signal","enrollment_collapse","sponsor_decision","strategic_reprioritization","translational_mismatch","biomarker_failure","any"],"type":"string","default":"any"}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"search_preprint_flags","title":"Search Preprint Flags","description":"Search the Claidex Preprint Watch database for bioRxiv preprints flagged as contradicting the clinical failure record. Search by target gene, disease, or preprint title.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["query","severity"],"properties":{"query":{"type":"string","minLength":1,"description":"Search term: gene symbol, disease, or preprint title fragment"},"severity":{"enum":["STRONG","MODERATE","MILD","any"],"type":"string","default":"any"}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"search_pubmed","title":"Search Pubmed","description":"Search PubMed for biomedical literature. Returns title, authors, journal, year, DOI, abstract, and PMID for each result.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["query","max_results"],"properties":{"query":{"type":"string","minLength":1,"description":"PubMed search query"},"max_results":{"type":"number","default":5,"maximum":10,"minimum":1}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"},{"name":"web_search","title":"Web Search","description":"Search the web for recent news, investor commentary, analyst notes, press releases, and conference coverage about drugs, clinical trials, or biomedical mechanisms.","input_schema":{"type":"object","$schema":"https://json-schema.org/draft/2020-12/schema","required":["query","focus"],"properties":{"focus":{"enum":["news","academic","investor","any"],"type":"string","default":"any"},"query":{"type":"string","minLength":1,"description":"Search query"}},"additionalProperties":false},"output_schema":null,"annotations":null,"source":"probe","observed_at":"2026-10-10T00:17:53.317Z"}],"next_cursor":null,"next_actions":[{"action":"get_connection","description":"Connection block to call these tools","href":"/v1/servers/com.claidex%2Ffailure-intelligence/connection?target=mcpServers","arguments":{"name":"com.claidex/failure-intelligence","target":"mcpServers"}},{"action":"get_server","description":"Full descriptor with trust and connectability","href":"/v1/servers/com.claidex%2Ffailure-intelligence","arguments":{"name":"com.claidex/failure-intelligence"}}]}